rs27191319 SNP Detail

Summary

• ID
  rs27191319
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:34850099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGACAATC TCCCACTTTG
  TGCCCACAGG CCAACCCAAT GTAGACAATC TCTCATTGAG ACTCCCTTCC CAGGTCATGC
  CAAGTTGACC ATTATAGCTA GCTGGCACAG TAGGCAAAGG TGTGGCAGGG GCCTTGACTG
  AAGTGACCTG CTCCAAAAGC TTCGATAATT TATTCAGGTG ATGGTCACAC CCTTCTTGTT
  Y
  CTCACAATGA GAGATTTAAA ATGGCAAATG ACACTTACAC AGTGTTTTGG CATCTATCAG
  CTTCCTTGAT TCTCCCAGGT GGTCAGGTCA AGTTAGACTC TGTTATGTCT CTAGATAGAG
  TCAATGGTCT ACCAAGCCTG GGGTGACACC AGGACATCTA GTGGCCAAGA GGTTACTCCA
  TCCTACAGAC TTCCAACTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37393738	NES08751704	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27191319					SNP	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37393738	NES08751704	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34850099 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11563	CpG island 11563			1272 bp proximal
Gm52552	predicted gene, 52552			within coordinates
Gm74856	predicted gene, 74856			1452 bp downstream
Rr396906	regulatory region 396906			1703 bp downstream
Rr555565	regulatory region 555565			1790 bp distal
Rr555566	regulatory region 555566			1608 bp distal
Rr555567	regulatory region 555567			1016 bp distal
Rr555568	regulatory region 555568			407 bp proximal
Rr555569	regulatory region 555569			1438 bp proximal
Rr555570	regulatory region 555570			1488 bp proximal
Traf1	TNF receptor-associated factor 1			Intron
				Noncoding-Transcript-Variant
Tssr476	transcription start site region 476			1770 bp downstream
Tssr17437	transcription start site region 17437			1752 bp downstream
Tssr17438	transcription start site region 17438			1732 bp downstream
Tssr17439	transcription start site region 17439			1218 bp downstream
Tssr17440	transcription start site region 17440			915 bp upstream
Tssr17441	transcription start site region 17441			1314 bp upstream
Tssr17442	transcription start site region 17442			1596 bp upstream
Tssr17443	transcription start site region 17443			1615 bp upstream
Tssr17444	transcription start site region 17444			1632 bp upstream
Tssr17445	transcription start site region 17445			1797 bp upstream
Tssr23667	transcription start site region 23667			1999 bp upstream
Tssr23668	transcription start site region 23668			1974 bp upstream
Tssr23669	transcription start site region 23669			1946 bp upstream
Tssr23670	transcription start site region 23670			1914 bp upstream
Tssr23671	transcription start site region 23671			1455 bp upstream
Tssr23672	transcription start site region 23672			1344 bp upstream
Tssr23673	transcription start site region 23673			1468 bp downstream
Tssr23674	transcription start site region 23674			1664 bp downstream
Tssr23675	transcription start site region 23675			1702 bp downstream
Tssr23676	transcription start site region 23676			1715 bp downstream
Tssr23677	transcription start site region 23677			1733 bp downstream
Tssr23678	transcription start site region 23678			1866 bp downstream