rs27191322 SNP Detail

Summary

• ID
  rs27191322
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:34848975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACTTCCC CACCTCAGAC
  TCAGCAGCAC CTTCCTCCCA AGCCCCACTC AGGAAGTCAT AGGTGGCTGC GTATCTGGTC
  AGGAGTCACC ACTTTCCTGT TGAGAACAAA GCCCTGGAGG AGTCCAGGTG CATGGGGGGC
  TGCTCTCAGC AGCCCATCAG ACTGGAGATG CATGCGTGCA TGAGACGAGA ACATGGAAAA
  Y
  ATACAGCTGT GTGCTGGGCT GACTGTGTCC TGGGCAGACT TGCTCCTGCG ATCCTTACAA
  TCCTTCTGCA GCTACATACA GCTCAGTGAA GGAAGGTGTG AGGTTCAAGA AGGCACAGCC
  TGTGGTAGAG CAGTGGGCTG TGCTCTTCCA ACATGGAAGA GGTAAGAATG AGGCAGCACC
  GTGAAGTTTC AGAGCCTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37393741	NES08751754	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27191322					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37393741	NES08751754	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34848975 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm52552	predicted gene, 52552			within coordinates
Gm74856	predicted gene, 74856			328 bp downstream
Rr396906	regulatory region 396906			579 bp downstream
Rr555565	regulatory region 555565			666 bp distal
Rr555566	regulatory region 555566			484 bp distal
Rr555567	regulatory region 555567			within coordinates
Rr555568	regulatory region 555568			1531 bp proximal
Traf1	TNF receptor-associated factor 1			Intron
				Noncoding-Transcript-Variant
Tssr475	transcription start site region 475			1786 bp downstream
Tssr476	transcription start site region 476			646 bp downstream
Tssr17437	transcription start site region 17437			628 bp downstream
Tssr17438	transcription start site region 17438			608 bp downstream
Tssr17439	transcription start site region 17439			94 bp downstream
Tssr23667	transcription start site region 23667			875 bp upstream
Tssr23668	transcription start site region 23668			850 bp upstream
Tssr23669	transcription start site region 23669			822 bp upstream
Tssr23670	transcription start site region 23670			790 bp upstream
Tssr23671	transcription start site region 23671			331 bp upstream
Tssr23672	transcription start site region 23672			220 bp upstream