rs27191323 SNP Detail

Summary

• ID
  rs27191323
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:34848860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTATGACT GAGGCAACCA
  GAGGCAGCAG AAAGGCCTCC GATGACCCCA CTCTGCTGGT GGCATTGTGC ATGAGTCACG
  ATGGTGACAA ATAGGGCCCT ACCTCGCTTA AGCCCAAGAC TTCCCCACCT CAGACTCAGC
  AGCACCTTCC TCCCAAGCCC CACTCAGGAA GTCATAGGTG GCTGCGTATC TGGTCAGGAG
  Y
  CACCACTTTC CTGTTGAGAA CAAAGCCCTG GAGGAGTCCA GGTGCATGGG GGGCTGCTCT
  CAGCAGCCCA TCAGACTGGA GATGCATGCG TGCATGAGAC GAGAACATGG AAAATATACA
  GCTGTGTGCT GGGCTGACTG TGTCCTGGGC AGACTTGCTC CTGCGATCCT TACAATCCTT
  CTGCAGCTAC ATACAGCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37393742	NES08751753	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27191323					SNP	T	T	T	T	T	C	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37393742	NES08751753	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34848860 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm52552	predicted gene, 52552			within coordinates
Gm74856	predicted gene, 74856			213 bp downstream
Rr396906	regulatory region 396906			464 bp downstream
Rr555565	regulatory region 555565			551 bp distal
Rr555566	regulatory region 555566			369 bp distal
Rr555567	regulatory region 555567			within coordinates
Rr555568	regulatory region 555568			1646 bp proximal
Traf1	TNF receptor-associated factor 1			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Tssr475	transcription start site region 475			1671 bp downstream
Tssr476	transcription start site region 476			531 bp downstream
Tssr17437	transcription start site region 17437			513 bp downstream
Tssr17438	transcription start site region 17438			493 bp downstream
Tssr17439	transcription start site region 17439			7 bp upstream
Tssr23667	transcription start site region 23667			760 bp upstream
Tssr23668	transcription start site region 23668			735 bp upstream
Tssr23669	transcription start site region 23669			707 bp upstream
Tssr23670	transcription start site region 23670			675 bp upstream
Tssr23671	transcription start site region 23671			216 bp upstream
Tssr23672	transcription start site region 23672			105 bp upstream