rs27191324 SNP Detail

Summary

• ID
  rs27191324
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:34848406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTCTCTG GCTTGTGTGG
  TACGACGTCA TAGCTGAGTC ACAGCAAGGG TGGAGTAGGA ATTACCCTTT GTGGTTAAAA
  AAATCCCCTG GACAGAGGCT AAAAACTTTA AGGAGTGTCC AGACACTTTT CAGAGTGAGA
  ACGAGCAAGA GACAGAATCA GAGGAAGAGA GTAGTGCCCT GGCTCTCCAG CAGAGTCACA
  R
  TTCCTCCGCC TGAGAACCAC GGGCTGCCTT CTCTATCTCC TCCCGGACCC TTGGTGGAGA
  GGCCAAGGCT GTTTTGTGCC CCCCACCCCC CCAGTACCTC TGGAACAATG GGGCTCACCT
  TTCTGATGGG AATCTCCAGG GTTCTGGGTC CTCCAGGATA TCTGGGTGGC CTTGAGTAAA
  TGTCACTTTC TCACACTGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37393743	NES08751802	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27191324					SNP	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37393743	NES08751802	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34848406 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm52552	predicted gene, 52552			within coordinates
Gm74856	predicted gene, 74856			within coordinates
Rr396906	regulatory region 396906			10 bp downstream
Rr555565	regulatory region 555565			97 bp distal
Rr555566	regulatory region 555566			within coordinates
Rr555567	regulatory region 555567			189 bp proximal
Traf1	TNF receptor-associated factor 1			Intron
				Noncoding-Transcript-Variant
Tssr475	transcription start site region 475			1217 bp downstream
Tssr476	transcription start site region 476			77 bp downstream
Tssr17437	transcription start site region 17437			59 bp downstream
Tssr17438	transcription start site region 17438			39 bp downstream
Tssr17439	transcription start site region 17439			461 bp upstream
Tssr23667	transcription start site region 23667			306 bp upstream
Tssr23668	transcription start site region 23668			281 bp upstream
Tssr23669	transcription start site region 23669			253 bp upstream
Tssr23670	transcription start site region 23670			221 bp upstream
Tssr23671	transcription start site region 23671			213 bp downstream
Tssr23672	transcription start site region 23672			318 bp downstream