rs27191325 SNP Detail

Summary

• ID
  rs27191325
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:34847440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCCCAAGG CCACTTAGGA
  GTATCCTCAG CAGGAAACTC ACAGGAGGCA AGGAGGCTTG ATCTCTCTGG GGGACTTTGC
  AGTTCTCATC TATGCAATAG GGGAGCGATT GTACTGCCTT CTGGAAGCTG GTCTGAGGAC
  ACAGGCACTG GCTGGGTATG TGACACACAG CAGGTGCATA ACAATTGCTC AAGGCAGGCT
  R
  TTAATGCTGC TATTGATCCA ATTATTTACT CCTTAAGCAT AAATGTATAC CTTACTGTAT
  CTTTGCCCCT TTAACTGGGT CTAATGGAAC AAAATTGTGT TGTTCTTTTT TTTTTTTTAA
  TCACAGTTTG ATGTTTGCCA AGGGGAGACA CATTAATTAC TGTAAGAAGT TCTGGGAACG
  TTATTGATGG AGTCTTGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37393744	NES08751801	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27191325					SNP	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37393744	NES08751801	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34847440 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm52552	predicted gene, 52552			within coordinates
Gm74856	predicted gene, 74856			859 bp upstream
Rr396906	regulatory region 396906			655 bp upstream
Rr555565	regulatory region 555565			698 bp proximal
Rr555566	regulatory region 555566			870 bp proximal
Rr555567	regulatory region 555567			1155 bp proximal
Traf1	TNF receptor-associated factor 1			Intron
				Noncoding-Transcript-Variant
Tssr475	transcription start site region 475			251 bp downstream
Tssr476	transcription start site region 476			882 bp upstream
Tssr17437	transcription start site region 17437			890 bp upstream
Tssr17438	transcription start site region 17438			922 bp upstream
Tssr17439	transcription start site region 17439			1427 bp upstream
Tssr23667	transcription start site region 23667			650 bp downstream
Tssr23668	transcription start site region 23668			674 bp downstream
Tssr23669	transcription start site region 23669			701 bp downstream
Tssr23670	transcription start site region 23670			724 bp downstream
Tssr23671	transcription start site region 23671			1179 bp downstream
Tssr23672	transcription start site region 23672			1284 bp downstream