CCCCTTCAGT CACCAAATTC GGACTTCTCA TTTGGCTGAT TCAGTTTCCC CACATTCTTA CCGTTGTAAA GTCCCAAAGA AAAGACCGTG CTCAGGGCCC AAGGCCACTT AGGAGTATCC TCAGCAGGAA ACTCACAGGA GGCAAGGAGG CTTGATCTCT CTGGGGGACT TTGCAGTTCT CATCTATGCA ATAGGGGAGC R ATTGTACTGC CTTCTGGAAG CTGGTCTGAG GACACAGGCA CTGGCTGGGT ATGTGACACA CAGCAGGTGC ATAACAATTG CTCAAGGCAG GCTATTAATG CTGCTATTGA TCCAATTATT TACTCCTTAA GCATAAATGT ATACCTTACT GTATCTTTGC CCCTTTAACT GGGTCTAATG GAACAAAATT GTGTTGTTCT R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37393745 | NES08751800 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
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rs27191326 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37393745 | NES08751800 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr2:34847346 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm52552 | predicted gene, 52552 | within coordinates | ||||||
Gm74856 | predicted gene, 74856 | 953 bp upstream | ||||||
Rr396906 | regulatory region 396906 | 749 bp upstream | ||||||
Rr555565 | regulatory region 555565 | 792 bp proximal | ||||||
Rr555566 | regulatory region 555566 | 964 bp proximal | ||||||
Rr555567 | regulatory region 555567 | 1249 bp proximal | ||||||
Traf1 | TNF receptor-associated factor 1 | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Tssr475 | transcription start site region 475 | 157 bp downstream | ||||||
Tssr476 | transcription start site region 476 | 976 bp upstream | ||||||
Tssr17437 | transcription start site region 17437 | 984 bp upstream | ||||||
Tssr17438 | transcription start site region 17438 | 1016 bp upstream | ||||||
Tssr17439 | transcription start site region 17439 | 1521 bp upstream | ||||||
Tssr23667 | transcription start site region 23667 | 744 bp downstream | ||||||
Tssr23668 | transcription start site region 23668 | 768 bp downstream | ||||||
Tssr23669 | transcription start site region 23669 | 795 bp downstream | ||||||
Tssr23670 | transcription start site region 23670 | 818 bp downstream | ||||||
Tssr23671 | transcription start site region 23671 | 1273 bp downstream | ||||||
Tssr23672 | transcription start site region 23672 | 1378 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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