rs27191326 SNP Detail

Summary

• ID
  rs27191326
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:34847346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTTCAGT CACCAAATTC
  GGACTTCTCA TTTGGCTGAT TCAGTTTCCC CACATTCTTA CCGTTGTAAA GTCCCAAAGA
  AAAGACCGTG CTCAGGGCCC AAGGCCACTT AGGAGTATCC TCAGCAGGAA ACTCACAGGA
  GGCAAGGAGG CTTGATCTCT CTGGGGGACT TTGCAGTTCT CATCTATGCA ATAGGGGAGC
  R
  ATTGTACTGC CTTCTGGAAG CTGGTCTGAG GACACAGGCA CTGGCTGGGT ATGTGACACA
  CAGCAGGTGC ATAACAATTG CTCAAGGCAG GCTATTAATG CTGCTATTGA TCCAATTATT
  TACTCCTTAA GCATAAATGT ATACCTTACT GTATCTTTGC CCCTTTAACT GGGTCTAATG
  GAACAAAATT GTGTTGTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37393745	NES08751800	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27191326					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37393745	NES08751800	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34847346 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm52552	predicted gene, 52552			within coordinates
Gm74856	predicted gene, 74856			953 bp upstream
Rr396906	regulatory region 396906			749 bp upstream
Rr555565	regulatory region 555565			792 bp proximal
Rr555566	regulatory region 555566			964 bp proximal
Rr555567	regulatory region 555567			1249 bp proximal
Traf1	TNF receptor-associated factor 1			Intron
				Noncoding-Transcript-Variant
Tssr475	transcription start site region 475			157 bp downstream
Tssr476	transcription start site region 476			976 bp upstream
Tssr17437	transcription start site region 17437			984 bp upstream
Tssr17438	transcription start site region 17438			1016 bp upstream
Tssr17439	transcription start site region 17439			1521 bp upstream
Tssr23667	transcription start site region 23667			744 bp downstream
Tssr23668	transcription start site region 23668			768 bp downstream
Tssr23669	transcription start site region 23669			795 bp downstream
Tssr23670	transcription start site region 23670			818 bp downstream
Tssr23671	transcription start site region 23671			1273 bp downstream
Tssr23672	transcription start site region 23672			1378 bp downstream