rs27191328 SNP Detail

Summary

• ID
  rs27191328
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:34847209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGTGAGG TGGGGGGTTG
  GAGAACCCCA TATAAGCTCA GAGCATCAGC TGTCCAGGAA GCCCAACAAC TGCGGCCTCT
  ACCCTCTTCC TGGCCTTTCC ACAGCCACAA CCTCTGGCCC TGCTCCTGCA GCCTCCTCCC
  CTTCAGTCAC CAAATTCGGA CTTCTCATTT GGCTGATTCA GTTTCCCCAC ATTCTTACCG
  Y
  TGTAAAGTCC CAAAGAAAAG ACCGTGCTCA GGGCCCAAGG CCACTTAGGA GTATCCTCAG
  CAGGAAACTC ACAGGAGGCA AGGAGGCTTG ATCTCTCTGG GGGACTTTGC AGTTCTCATC
  TATGCAATAG GGGAGCGATT GTACTGCCTT CTGGAAGCTG GTCTGAGGAC ACAGGCACTG
  GCTGGGTATG TGACACACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37393747	NES08751798	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27191328					SNP	T	T	T	T	T	C	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37393747	NES08751798	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34847209 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm52552	predicted gene, 52552			within coordinates
Gm74856	predicted gene, 74856			1090 bp upstream
Rr396906	regulatory region 396906			886 bp upstream
Rr555565	regulatory region 555565			929 bp proximal
Rr555566	regulatory region 555566			1101 bp proximal
Rr555567	regulatory region 555567			1386 bp proximal
Traf1	TNF receptor-associated factor 1			Intron
				Noncoding-Transcript-Variant
Tssr475	transcription start site region 475			20 bp downstream
Tssr476	transcription start site region 476			1113 bp upstream
Tssr17437	transcription start site region 17437			1121 bp upstream
Tssr17438	transcription start site region 17438			1153 bp upstream
Tssr17439	transcription start site region 17439			1658 bp upstream
Tssr23667	transcription start site region 23667			881 bp downstream
Tssr23668	transcription start site region 23668			905 bp downstream
Tssr23669	transcription start site region 23669			932 bp downstream
Tssr23670	transcription start site region 23670			955 bp downstream
Tssr23671	transcription start site region 23671			1410 bp downstream
Tssr23672	transcription start site region 23672			1515 bp downstream