rs27191330 SNP Detail

Summary

• ID
  rs27191330
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:34846992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGAGTCT GTCTACTGGA
  AATGGGCATC AGGTTCAGAC AAGGGTGCTC TATAGGATAT CTGTGCACAT AGCTCTGACT
  GACAGCAAGT GTGCAAATTG CTTTCTAGGT GAGGAGACCG AGGCCATAGG ATAGCAAGGC
  AAATCCAGAG CACAGCACCT CAGGCTGGGC CCCTGCCTGC ATGCTCCAGT CAGCTCTGCT
  Y
  ATTCTTCTGC CAGGTTTTCA GTGAGGTGGG GGGTTGGAGA ACCCCATATA AGCTCAGAGC
  ATCAGCTGTC CAGGAAGCCC AACAACTGCG GCCTCTACCC TCTTCCTGGC CTTTCCACAG
  CCACAACCTC TGGCCCTGCT CCTGCAGCCT CCTCCCCTTC AGTCACCAAA TTCGGACTTC
  TCATTTGGCT GATTCAGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37393749	NES08751796	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27191330					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37393749	NES08751796	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34846992 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm52552	predicted gene, 52552			within coordinates
Gm74856	predicted gene, 74856			1307 bp upstream
Rr396906	regulatory region 396906			1103 bp upstream
Rr555565	regulatory region 555565			1146 bp proximal
Rr555566	regulatory region 555566			1318 bp proximal
Rr555567	regulatory region 555567			1603 bp proximal
Traf1	TNF receptor-associated factor 1			Intron
				Noncoding-Transcript-Variant
Tssr475	transcription start site region 475			195 bp upstream
Tssr476	transcription start site region 476			1330 bp upstream
Tssr17437	transcription start site region 17437			1338 bp upstream
Tssr17438	transcription start site region 17438			1370 bp upstream
Tssr17439	transcription start site region 17439			1875 bp upstream
Tssr23667	transcription start site region 23667			1098 bp downstream
Tssr23668	transcription start site region 23668			1122 bp downstream
Tssr23669	transcription start site region 23669			1149 bp downstream
Tssr23670	transcription start site region 23670			1172 bp downstream
Tssr23671	transcription start site region 23671			1627 bp downstream
Tssr23672	transcription start site region 23672			1732 bp downstream