rs27191349 SNP Detail

Summary

• ID
  rs27191349
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:34842921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCAATAAA TCAATGGGAC
  TGTCAGGATG CCACTGGCTT GCCAAGATTA TAGATGCAAA CTGTCCACTT TAGGAGTGTG
  AGGATGGGGA GTTCACACTG GTCATCACAC TTCAGAGGAC ACTGATACAG AGACAAGGAA
  GAAATGCAGG AGATCTACAC ACACAGGGAC CCTGGGAACA GAAGACTGAC TGGCCATCCT
  Y
  AAATGAAGCC TGCTGCAGCC CAGTACAAAT AAAAAAGAAG TCGGTGCTGT GGCCAGAACC
  CAATATATGA GTGTTTGTGG GGGTCACTTG ATAGTGCCAC ATATGATTCA TAGACATAAC
  CCCATGTGGC AGGAGCCCAC TGTATATATA CACACTGGAA GTTCGACTCG ACTGCTTAAA
  CCCCTGTCAT TTGGGGCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37393768	NES08751938	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27191349					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37393768	NES08751938	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34842921 () rs orientation: forward

Symbol	Name	Function Class
Gm52552	predicted gene, 52552	within coordinates
Rr49044	regulatory region 49044	within coordinates
Rr53878	regulatory region 53878	991 bp distal
Traf1	TNF receptor-associated factor 1	within coordinates
Tssr23666	transcription start site region 23666	568 bp downstream