rs27191360 SNP Detail

Summary

• ID
  rs27191360
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:34841927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGTTCAT GTGGTTGGTT
  TGGGATGCAG AGCCTAGCCT AGCAAAGCCC CACCCACCTG TCCCACTGCC CTCTGTTTGC
  AGGGACAAGC TGTTCCCAAC CAAGAATAGG AAACAGATGT CTGATGGGAG CAAGCAGAGG
  GTGGCCACAT CAGGGAGACA CACTGGCTCT GGGGACTCCA TTTCAGTGAA GCTTCTCCCA
  Y
  GGGTCACTGC TGTTGACATG TGGCTCAGGG ACACCAGACG CAGGTATTTG TGACCTAGGT
  AAGGTTCTAT GACTCCTTCA TGTCCACAGT TCCCACCCTT TGTGGCTTGA AGTTGACAGT
  GCTCAAAAGG ATAAGGAGAA GAAAGTAGTA CAGAGAACAA TGGGATTCGG ACATCGCCTA
  CACAGTGGGA TGAACCCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37393779	NES08751962	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27191360					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37393779	NES08751962	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34841927 () rs orientation: forward

Symbol	Name	Function Class
Gm52552	predicted gene, 52552	within coordinates
Rr49044	regulatory region 49044	674 bp proximal
Rr53878	regulatory region 53878	within coordinates
Traf1	TNF receptor-associated factor 1	within coordinates
Tssr23666	transcription start site region 23666	1562 bp downstream