rs27191367 SNP Detail

Summary

• ID
  rs27191367
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:34839319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAG CCCTACTGCA CACAGATGCA
  R
  AGCAAAATGG AGCTAACCCT CAATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37393786	NES08752058	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	G	A		G	G	G	G	G	G	G	G	A
ss45207550	mCV23212548	ABI	CRAMUS_MOUSE	f	SNP		A	G					A		G
ss146414371	ENSMUSSNP1447886	ENSEMBL	ENSEMBL_Sanger	f	SNP			G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27191367					SNP	A	A	G	G	A	G	A	A	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37393786	NES08752058	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34839319 () rs orientation: forward

Symbol	Name	Function Class
Gm52552	predicted gene, 52552	1988 bp upstream
Rr53877	regulatory region 53877	361 bp distal
Rr61273	regulatory region 61273	1719 bp distal
Traf1	TNF receptor-associated factor 1	within coordinates