rs27192620 SNP Detail

Summary

• ID
  rs27192620
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:32792250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTGGTAA TAAATAGTTC
  AGCCCACCGT TTGCCCTCTA GTTGTAAGCT GAGCACTGTT ATAATTAAGA CTAGTGTTTT
  TGGTGCCCTG TGCTGTTATG ACCCTGCCCA TGTCCTGCCG GATCTGGCCC TGTGATGCTT
  GGTTTCTAAA TGAAGAACCT GAGGGTCTGA GAGAGCTTGG CAGCCCACGC CTCACTCTCA
  M
  CCGGCCGCTG GCAGCTGGAA GGTGGGCCCA TCAGTTTTCA GGTCCCCACG GCTCTGTGAG
  CAACAGTGTC TGGGGCTGAG TCAGTGCACG AGGGTGGATG AAAATATGCA ACCTGGTGGG
  TGAGGCCAAC CCGCACCCAT AGACGGCCCC ACCCAGGCAT CTGGAGCATT GTACTAGCCT
  CAGGTTCTAG ACCAGGGTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37398847	NES08752354	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27192620					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37398847	NES08752354	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32792250 () rs orientation: forward

Symbol	Name	Function Class
Niban2	niban apoptosis regulator 2	within coordinates
Rr555098	regulatory region 555098	490 bp proximal
Tssr17364	transcription start site region 17364	392 bp downstream