rs27192621 SNP Detail

Summary

• ID
  rs27192621
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:32792153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCTTTCT TTCTTTCTTT
  CTTTCTTTCT TTCTTTCTTT CTTTCTCTTT TTCTTTCTTT TATCCTTTAT TGGATTTTTT
  TCAAGCTATA AAAGTTATTC CTGGTAATAA ATAGTTCAGC CCACCGTTTG CCCTCTAGTT
  GTAAGCTGAG CACTGTTATA ATTAAGACTA GTGTTTTTGG TGCCCTGTGC TGTTATGACC
  Y
  TGCCCATGTC CTGCCGGATC TGGCCCTGTG ATGCTTGGTT TCTAAATGAA GAACCTGAGG
  GTCTGAGAGA GCTTGGCAGC CCACGCCTCA CTCTCACCCG GCCGCTGGCA GCTGGAAGGT
  GGGCCCATCA GTTTTCAGGT CCCCACGGCT CTGTGAGCAA CAGTGTCTGG GGCTGAGTCA
  GTGCACGAGG GTGGATGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37398848	NES08752353	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27192621					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37398848	NES08752353	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32792153 () rs orientation: forward

Symbol	Name	Function Class
Niban2	niban apoptosis regulator 2	within coordinates
Rr555098	regulatory region 555098	587 bp proximal
Tssr17364	transcription start site region 17364	295 bp downstream