rs27192625 SNP Detail

Summary

• ID
  rs27192625
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:32791334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGAGAAC CCTGTGTGGG
  CACACACACG GAACTCTGGG AATTCTGGAT TCCATAGCAG GATTGACGGG TGAGGTGTCT
  CTCTGGGTCG CCCTTGACCA TGACCAAGGG GTAGCCCTTG ATGGTTCCAG CTGTGTCAAG
  ACTCATGTGG CTCTGTAGTC AACTGGCTCA ACTGCAAGAC TGGGGTCTTC AAAACTTGTC
  S
  GTATGCACAC ACTGAGTGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAACA CTTTATTTGT
  TCTGGACCAC TGTCCAGGGA AATGGCCTTT CCAGAGCTTG GTGGAGTACC CTCCCTTCTT
  AGACATGGTC TAGAGACCAA TGCCTGCAGC CCTGGTGCCC TGAGGCTACC TGACATGGTT
  CTGTATTCTC CAGCTGCCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37398852	NES08752371	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27192625					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37398852	NES08752371	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32791334 () rs orientation: forward

Symbol	Name	Function Class
Niban2	niban apoptosis regulator 2	within coordinates
Rr555097	regulatory region 555097	1896 bp distal
Rr555098	regulatory region 555098	1406 bp proximal
Tssr17364	transcription start site region 17364	475 bp upstream