rs27192626 SNP Detail

Summary

• ID
  rs27192626
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:32790717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAAGGTG CCCTGCCAGC
  CTTGACTACA TGGGAGCAGG TAGGGGGCTA GGCCAAAGGC TACCCTTTCT GATCTGACAT
  CCACAGATGC ATGACCTTGG GGAAATCTCT TGGCTTTTCT GAGCCTGGTG TCCTCATCTG
  TAAAAATGCA CCAGCCCCCT TTACTCCCCC CTGGGCCTGG GCAGGGACCT AGCAAGTAAG
  R
  CTGGAGCCCC ACAAAGCCAC CATGTCTCGT GTGAAATGCC CCTGGAGATG GGAGACTCTG
  GACAGGCTTT CGGGGAAGTA AGATTTTAAA GCTGACTTCC TGCTGGCCTG GAATGTGGCT
  CACTGGTGCT GTGCCCACCT GGTGTGCATG AAGCCATAGT CCAGTCCCCA GCAACGGAAA
  AAACAAAACA ACAAAATCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37398853	NES08752390	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27192626					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37398853	NES08752390	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32790717 () rs orientation: forward

Symbol	Name	Function Class
Niban2	niban apoptosis regulator 2	within coordinates
Rr555097	regulatory region 555097	1279 bp distal
Tssr17364	transcription start site region 17364	1092 bp upstream