rs27192628 SNP Detail

Summary

• ID
  rs27192628
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:32790068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGCTTTC CCCATATACA
  GCTTAACTTG CAGGATGGGC CTGGTACCCC TCTCCCAGAT CCCCAAGGCT TCAGGGAACT
  TCAGGACACC CAAGGACCCT TGTTCTTCAT GGCTTCTGCT ATCTACACAG GAACCAGTGT
  GATCCCCAGA ACTGTCACTT TGGAAAATCA GAGATCAGCA CTCTTCCGGC CACTGAGCCG
  Y
  TGTTAGTATT GGTCATGTGC ACTGTCCTTG TGAGGGCCCC GTGCTCTCTG CTCATTGGTC
  CTCTGATTTC CTCCCCGCCT AGTCACTGAT GTGCCATCTT GCAGAGATGA AAACAGAGAG
  GGAAAGTGCC TTGGCCGGGG CCTCATAGCC CTGTGGGTGG AACTGGGACT TGAACCCAGA
  GCTTGTCCTT GCAAGCCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37398855	NES08752424	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27192628					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37398855	NES08752424	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32790068 () rs orientation: forward

Symbol	Name	Function Class
D2Mit235	DNA segment, Chr 2, Massachusetts Institute of Technology 235	1477 bp distal
Niban2	niban apoptosis regulator 2	within coordinates
Rr555097	regulatory region 555097	630 bp distal
Tssr17364	transcription start site region 17364	1741 bp upstream