rs27192718 SNP Detail

Summary

• ID
  rs27192718
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:32715941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGTCACT GAGCTCTGTC
  CCAGCCAGAT CCCTAGGATT CTAAAGGCCA GCACAATAGT CCATAGCTTA CTCAAAAATA
  TTTCCTGTAG ACACTTAATT TACTTATTTT GTGGTGTAGT GAAAAACTGG ACAGAAAGTG
  TTTGAGCAAA TTAGGTTATA TTCCTTTAAA AGACTAGTGT GTACCCATTG GAAATAATGA
  W
  ATAGGAAGAC ACATGTTCAC GCCTTCACTC CTTCAGTGAG CACTGGCTGG GGGCCCCCAG
  TGTAGCAGAC ACAGGAGGAG CGACACAAGC TTCAGCCAGC TCTCGCGGCC TCGCAGGCTC
  ATGATGGGAG CAACCACTCA AAGAAAGCAG CACCCAGAGC GTCTCCTGTG TGCCTCAAAA
  AGAGTATGCC AGGGTCCAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37398950	NES08753870	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27192718					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37398950	NES08753870	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32715941 () rs orientation: forward

Symbol	Name	Function Class
Rr42889	regulatory region 42889	1341 bp distal
Rr48900	regulatory region 48900	60 bp proximal
Rr48901	regulatory region 48901	1060 bp proximal
Rr48902	regulatory region 48902	1460 bp proximal
Rr61147	regulatory region 61147	142 bp distal
Stxbp1	syntaxin binding protein 1	within coordinates
Tssr23566	transcription start site region 23566	967 bp upstream