rs27192720 SNP Detail

Summary

• ID
  rs27192720
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:32715884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTTTGTG GTCCTTTTAG
  GGGACGGAAC TCGGGCCCCA CACATACCAG GCAAGTGCTC TGTCACTGAG CTCTGTCCCA
  GCCAGATCCC TAGGATTCTA AAGGCCAGCA CAATAGTCCA TAGCTTACTC AAAAATATTT
  CCTGTAGACA CTTAATTTAC TTATTTTGTG GTGTAGTGAA AAACTGGACA GAAAGTGTTT
  R
  AGCAAATTAG GTTATATTCC TTTAAAAGAC TAGTGTGTAC CCATTGGAAA TAATGAAATA
  GGAAGACACA TGTTCACGCC TTCACTCCTT CAGTGAGCAC TGGCTGGGGG CCCCCAGTGT
  AGCAGACACA GGAGGAGCGA CACAAGCTTC AGCCAGCTCT CGCGGCCTCG CAGGCTCATG
  ATGGGAGCAA CCACTCAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37398952	NES08753867	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27192720					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37398952	NES08753867	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32715884 () rs orientation: forward

Symbol	Name	Function Class
Rr42889	regulatory region 42889	1284 bp distal
Rr48900	regulatory region 48900	117 bp proximal
Rr48901	regulatory region 48901	1117 bp proximal
Rr48902	regulatory region 48902	1517 bp proximal
Rr61147	regulatory region 61147	85 bp distal
Stxbp1	syntaxin binding protein 1	within coordinates
Tssr23566	transcription start site region 23566	910 bp upstream