rs27192728 SNP Detail

Summary

• ID
  rs27192728
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:32714522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTGACAT CTGGAAAGGG
  CTCAGAGAGC ATGAAAAGGA GGCCAATGAC CTCACAGCCT TCCTATGGAG ACAGCTGGGA
  GTCGTCGTCC CCACCCCCGT CCCCCAGGAT ATTAGATTTG AGAAGCACTG CTGTAAGTAA
  ATAAAAGACT CAGACCAGGC CTCAGGCCCA CGAGCCCCCT CTAACTCTCC GGTCAGGAAG
  Y
  CTGAGGTCTT CCAAGCTCAC TGTACCATGG GCTCCACACA GCTGTCACGT TGTGAGTTTC
  TACAATACCA CAGCCCCACA AGAATGGCAG CAGAGGCCTC GCATATATCA CAGAGGCCTT
  GTAGGAAATA TGACCTGCCC CTCTGAAAAG CCAGGCCCCA CATTATCCTG GAATGAAGGT
  TCACAGCAGA CATTAGCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37398960	NES08753903	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27192728					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37398960	NES08753903	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32714522 () rs orientation: forward

Symbol	Name	Function Class
Rr42889	regulatory region 42889	within coordinates
Rr48900	regulatory region 48900	1479 bp proximal
Rr61147	regulatory region 61147	within coordinates
Stxbp1	syntaxin binding protein 1	within coordinates
Tssr23565	transcription start site region 23565	1310 bp upstream
Tssr23566	transcription start site region 23566	448 bp downstream