rs27192732 SNP Detail

Summary

• ID
  rs27192732
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:32713174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACAGCCC ATGAGGAAGT
  TCCGAGAGTC CCACTAGCTC CTGGCCAGAG TGACGCTGAC CTCAGAGGAC CTTTGCCTGC
  TGAGCCAGCT CACCAGCTCA CCATATCCAG GAAGAGACTT CTGAACCACG CTCATGCACC
  AGCCATCCTC GGGCCAGGAA CTCACTTCTA TCACCTCCCC GCAACTCCAG CTCTGCCTTC
  K
  TTGTTTCTTC TGTGTGTGAG GTTAGGGAGA ATGTTGCATG TGTGTGCTCA TGTGTATGTG
  AGGGGATGCA TGCACAGATG GCACGTGTCC TCTTCAATAG ACCTCACTTT GTTTACTGGG
  CCGGGGCCTC TCAGTGATCC CAGAACTCAC TGATTCTGCT AGTGCACTTA GCCACTCGCC
  CAGTCAGCCA GCCTCAACCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37398964	NES08753966	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G		G	G	T	G
ss146404857	ENSMUSSNP3232791	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27192732					SNP	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37398964	NES08753966	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32713174 () rs orientation: forward

Symbol	Name	Function Class
Rr42888	regulatory region 42888	1174 bp distal
Rr42889	regulatory region 42889	1227 bp proximal
Rr53804	regulatory region 53804	1400 bp distal
Rr61147	regulatory region 61147	within coordinates
Stxbp1	syntaxin binding protein 1	within coordinates
Tssr23565	transcription start site region 23565	11 bp downstream
Tssr23566	transcription start site region 23566	1796 bp downstream