rs27192944 SNP Detail

Summary

• ID
  rs27192944
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:33674108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCGAGGTG GAAGCTGCCA
  CGGCCATAAC ACTCTCTCTG CCTCACCCCA GTCCACAGCA GAAGAGCTCA CTCACTACAG
  GTCCCAGTAA ATCCTTCTAG CCTTATAACT GTTTCTCTCA GGCATTTGTC ACAGTGACAG
  AGAAGCTAAC ATCAGAACCC AGCTCCTGAT GTACTGAAGG TAAAATCGGG CAGTGGAAAG
  Y
  TCTGTGGATC CTGTCAGTCA ACACTTTCCA CACCGGGAAC CACTGTCTCA GACCCTGGAT
  TCATGGTTTT CCCCAGTTCA GTGACTGATT TTGTATTTTT CTTACACATG AAACTCACTT
  TTTGAATTCA GAATGCCTAA CACTAGTGGG TGGCTCTACC ACTCCAAGTG CAGTGTCCCC
  TCTTCCCTTA GAGAAGGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37396878	NES08757779	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27192944					SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37396878	NES08757779	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:33674108 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mvb12b	multivesicular body subunit 12B			Intron
				mRNA-UTR
Rr555340	regulatory region 555340			1858 bp distal
Rr555341	regulatory region 555341			382 bp distal
Rr555342	regulatory region 555342			463 bp distal
Rr555343	regulatory region 555343			729 bp proximal
Rr555344	regulatory region 555344			1149 bp proximal