rs27192949 SNP Detail

Summary

• ID
  rs27192949
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:33673526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGGCCAG AGGCAGTGGG
  TCCTGCTGAA GCCAAAGTTA TAGGCAGCTG TAAGGTGCTG GGAACTGAAC CTGGTCCTCT
  GTAAGAGCAG TGTGCACTCT TAACAGCTGA GCCTTCTCCC TAGGCCCCAC TGCATTCGCT
  TCTTACAGGA GTGAAAGCCA AGCTCATGTC CAGCAAACAC ATCAGCTCCA TCAGGGCTGA
  S
  GAAGCCATCT GAGTCCAGCA CCTATGATGC CTCTGCTCTC AACGGGGCCT CCGAGCAGTG
  AGGGTGAGGA CAGCTATCAG GAGAGCTGCC TGGTCCAAGA GCTCCATCTG TCGCTAGGAA
  AACAAACCCT GGAGAAACAG GGCTACAGCT ACAGTCTGGA ACCTAAGGAC TCAAGTTTGG
  CTAACATTAC CATCTAGACT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37396883	NES08757812	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27192949					SNP	C	C	G	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37396883	NES08757812	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:33673526 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mvb12b	multivesicular body subunit 12B			Intron
				mRNA-UTR
Rr555340	regulatory region 555340			1276 bp distal
Rr555341	regulatory region 555341			within coordinates
Rr555342	regulatory region 555342			98 bp proximal
Rr555343	regulatory region 555343			1311 bp proximal
Rr555344	regulatory region 555344			1731 bp proximal
Tssr23614	transcription start site region 23614			1799 bp upstream