rs27193136 SNP Detail

Summary

• ID
  rs27193136
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:31187008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGC CCAACCATAT TGCATCCATG
  R
  AAGCGTCGAA AATCGATGGG GCTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37402757	NES08761060	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	A	G	A	A	A	A		A	A	G
ss146401679	ENSMUSSNP5871650	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
ss320221793	CHEV_2_31152516	CHEVERUD	SCREENING_POP	f	SNP												G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27193136					SNP	G	G	A	A	G	A	G	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37402757	NES08761060	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31187008 () rs orientation: forward

Symbol	Name	Function Class
Ncs1	neuronal calcium sensor 1	1007 bp downstream
Rr554600	regulatory region 554600	1617 bp distal
Rr554601	regulatory region 554601	1811 bp distal
Rr554602	regulatory region 554602	490 bp proximal