rs27193452 SNP Detail

Summary

• ID
  rs27193452
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30341137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCT TGATGAACTC TTGATCATCC
  Y
  ATGTCTGGCC ACTCAGTGCT GGAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37404777	NES08762467	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	C	T		C	C	C		C	C		T
ss45238099	mCV25441977	ABI	CRAMUS_MOUSE	f	SNP		C					T	C
ss146398980	ENSMUSSNP3883876	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss320221091	CHEV_2_30306645	CHEVERUD	SCREENING_POP	f	SNP											C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27193452					SNP	T	C	C	T	C	T	T	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37404777	NES08762467	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30341137 () rs orientation: forward

Symbol	Name	Function Class
Rr554329	regulatory region 554329	382 bp distal