rs27193458 SNP Detail

Summary

• ID
  rs27193458
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30339230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCGCCTGC CTCTGCTTCC
  CGAGTGCTAG GATTAAAGGT GTGCGTCACC ATGCCCGGCT GATAGTTATT TTTGTTGCTA
  CTTCATAACT GTGATTTTGC TGTTATGATT TGTAATATCT ATGTTTTCCT GTGGTCTTAG
  GTGACCCTGT GAAAGTGTCC TTTAGGCCCC AAAGGGTTGT GACCCCCTAG ATTGAGAATC
  M
  GTGTTCTAGA GGCTTAGTCA TTTCACAGGC TGTAGCTGTG TATTTGTGAC CACAGCATAC
  TAGAAAGGAC AGTATCTAGT GGATTGTAAT TAAGAAATTA ATGGGGGAGG GCTGCCTTTT
  GAGTTACACA TAGGCATGTC CAAAGTTTTG ATACTATATT TTAGTTGGGG TTTTACACTG
  TGAAGAGACG CCATGACCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss37404783	NES08762494	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs27193458					SNP	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37404783	NES08762494	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30339230 () rs orientation: forward

Symbol	Name	Function Class
Ptpa	protein phosphatase 2 protein activator	1411 bp downstream
Rr554328	regulatory region 554328	1154 bp distal
Rr554329	regulatory region 554329	1504 bp proximal