rs27194868 SNP Detail

Summary

• ID
  rs27194868
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:31956173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGTCTTC TGCTCTGGCT
  GAGCATGCAG TGTCAGAGGC TGGCTCAGGC TGGAGTCAAA TTTCGGCTCT ACCTCTTGTA
  AGACATGAGG TCTGCCAGTT CTCAACACCC CCATTCACAA CCTGCTTCCT TGTCCATAAG
  ATGGGGAAGC CCCGATGGCC ATCATGGCCC AGCCACTCTA GAATCAGAAC CTAATTTATT
  Y
  ATCCACATTG GCCACAGGCA GCGCCCAAGA GCCCCTTTCC AAGAAAGCCT GGGTTTCATC
  CAAGTCCACA CAAATGACCT TGTGCCAGGA GTCCACCATC AGGACACAGA GTCACTCTAG
  CAACTATGAG TCCCCCAACT TTCCACACAA ATGTTCCAAA AGCTGGGGCC ACTCAGCTGA
  GTGCCTGCTG CACACGGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37400696	NES08754103	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27194868					SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400696	NES08754103	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31956173 () rs orientation: forward

Symbol	Name	Function Class
Fam78a	family with sequence similarity 78, member A	within coordinates
Gm16534	predicted gene 16534	1250 bp upstream
Rr367162	regulatory region 367162	992 bp downstream
Rr554786	regulatory region 554786	1564 bp distal
Rr554787	regulatory region 554787	279 bp distal
Rr554788	regulatory region 554788	within coordinates
Tssr23449	transcription start site region 23449	1078 bp upstream
Tssr23450	transcription start site region 23450	1042 bp upstream
Tssr23451	transcription start site region 23451	798 bp upstream
Tssr23452	transcription start site region 23452	724 bp upstream
Tssr23453	transcription start site region 23453	704 bp upstream