rs27194869 SNP Detail

Summary

• ID
  rs27194869
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31956128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCCTAAT AAAAACCGAT
  GATTATTTGG CACCAAATGT ATACCCAGAG TCTTCTGCTC TGGCTGAGCA TGCAGTGTCA
  GAGGCTGGCT CAGGCTGGAG TCAAATTTCG GCTCTACCTC TTGTAAGACA TGAGGTCTGC
  CAGTTCTCAA CACCCCCATT CACAACCTGC TTCCTTGTCC ATAAGATGGG GAAGCCCCGA
  Y
  GGCCATCATG GCCCAGCCAC TCTAGAATCA GAACCTAATT TATTTATCCA CATTGGCCAC
  AGGCAGCGCC CAAGAGCCCC TTTCCAAGAA AGCCTGGGTT TCATCCAAGT CCACACAAAT
  GACCTTGTGC CAGGAGTCCA CCATCAGGAC ACAGAGTCAC TCTAGCAACT ATGAGTCCCC
  CAACTTTCCA CACAAATGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37400697	NES08754102	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27194869					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400697	NES08754102	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31956128 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fam78a	family with sequence similarity 78, member A			Intron
				Noncoding-Transcript-Variant
Gm16534	predicted gene 16534			1205 bp upstream
Rr367162	regulatory region 367162			947 bp downstream
Rr554785	regulatory region 554785			1963 bp distal
Rr554786	regulatory region 554786			1519 bp distal
Rr554787	regulatory region 554787			234 bp distal
Rr554788	regulatory region 554788			within coordinates
Tssr23449	transcription start site region 23449			1033 bp upstream
Tssr23450	transcription start site region 23450			997 bp upstream
Tssr23451	transcription start site region 23451			753 bp upstream
Tssr23452	transcription start site region 23452			679 bp upstream
Tssr23453	transcription start site region 23453			659 bp upstream