rs27194870 SNP Detail

Summary

• ID
  rs27194870
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:31955708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACGGTCCC TTGCACCCTT
  GCACGCATGC GCAATCCACA ATCAAAAACC AAACTGACAC AGGCACCTCC CAGGAGCCAT
  CTGATGGAGA GTACCAGAGA AGCCCAAGAT GCAACTTCCT GCACTGTGTC TTGGCCTCAA
  GCAACCGAGA CCAGTACTGT TGGTATTGTA AAGTACCCAG AGAAGCCAAG CCTAAGGCCT
  R
  GATGGATGAA TTGGGCACTT CCTGCCCCTC ATAGCCGTGC AGTGAGGCCA CACCCACTCT
  GGGGAAGCCT ACAGCCCTCA GGTGAAGCTA ACCCTTCTTC AAAGCCTGCT TTTCTATGGG
  CGTACATAAC TAAGTACACA GACTTCTGGG ACGTGAGGTG GGGAGAAAGG CCTTTGTTGT
  CTGAAGACCC TGGATGGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37400698	NES08754148	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27194870					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400698	NES08754148	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31955708 () rs orientation: forward

Symbol	Name	Function Class
Fam78a	family with sequence similarity 78, member A	within coordinates
Gm16534	predicted gene 16534	785 bp upstream
Rr367162	regulatory region 367162	527 bp downstream
Rr554785	regulatory region 554785	1543 bp distal
Rr554786	regulatory region 554786	1099 bp distal
Rr554787	regulatory region 554787	within coordinates
Rr554788	regulatory region 554788	346 bp proximal
Tssr23449	transcription start site region 23449	613 bp upstream
Tssr23450	transcription start site region 23450	577 bp upstream
Tssr23451	transcription start site region 23451	333 bp upstream
Tssr23452	transcription start site region 23452	259 bp upstream
Tssr23453	transcription start site region 23453	239 bp upstream