rs27194871 SNP Detail

Summary

• ID
  rs27194871
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:31955589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTAGCTA TATGCTGTCC
  CAAAGATGGC TTCCTGAGCT CCTGGGGTCT GGTTTGTGTG AGCTGTCTGA ACTACTCTTT
  TGAGAACACA CACACATACC ACAAAACAAC AAAAACTCAT CACGGTCCCT TGCACCCTTG
  CACGCATGCG CAATCCACAA TCAAAAACCA AACTGACACA GGCACCTCCC AGGAGCCATC
  Y
  GATGGAGAGT ACCAGAGAAG CCCAAGATGC AACTTCCTGC ACTGTGTCTT GGCCTCAAGC
  AACCGAGACC AGTACTGTTG GTATTGTAAA GTACCCAGAG AAGCCAAGCC TAAGGCCTAG
  ATGGATGAAT TGGGCACTTC CTGCCCCTCA TAGCCGTGCA GTGAGGCCAC ACCCACTCTG
  GGGAAGCCTA CAGCCCTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37400699	NES08754147	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27194871					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400699	NES08754147	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31955589 () rs orientation: forward

Symbol	Name	Function Class
Fam78a	family with sequence similarity 78, member A	within coordinates
Gm16534	predicted gene 16534	666 bp upstream
Rr367162	regulatory region 367162	408 bp downstream
Rr554785	regulatory region 554785	1424 bp distal
Rr554786	regulatory region 554786	980 bp distal
Rr554787	regulatory region 554787	within coordinates
Rr554788	regulatory region 554788	465 bp proximal
Tssr23449	transcription start site region 23449	494 bp upstream
Tssr23450	transcription start site region 23450	458 bp upstream
Tssr23451	transcription start site region 23451	214 bp upstream
Tssr23452	transcription start site region 23452	140 bp upstream
Tssr23453	transcription start site region 23453	120 bp upstream