rs27194872 SNP Detail

Summary

• ID
  rs27194872
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:31955275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGGACAG CTGTCACAGC
  AGCAGGCAAG CAGAGAGCCT CTGTGCACCT GCTTCCTGGA ACCACGCTCG GCAGTGGCTT
  GCCCATTCCG ACAGCTGGCT CCAGGCCTGG AGGCCCTGGA GGGGACGCTG CCCCTGCTTT
  TGTGGACTTG ATATCTCTCG CTCGTTCTCA GCCTAGCCTG GACTTCTGAA TTTAACTTGC
  Y
  GTCAGCTAGA GCAGGCAGGA GGCTTTCATT GAGTCATCAG ATGTCACCTG GAAGCCACTT
  GCCTCCTGCA CATTCCACTA CCCAAACCCA GGCTGTCACA TCCCACTGTG GTGCAGCTAG
  CTATATGCTG TCCCAAAGAT GGCTTCCTGA GCTCCTGGGG TCTGGTTTGT GTGAGCTGTC
  TGAACTACTC TTTTGAGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37400700	NES08754146	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27194872					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400700	NES08754146	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31955275 () rs orientation: forward

Symbol	Name	Function Class
Fam78a	family with sequence similarity 78, member A	within coordinates
Gm16534	predicted gene 16534	352 bp upstream
Rr367161	regulatory region 367161	1920 bp downstream
Rr367162	regulatory region 367162	94 bp downstream
Rr554785	regulatory region 554785	1110 bp distal
Rr554786	regulatory region 554786	666 bp distal
Rr554787	regulatory region 554787	within coordinates
Rr554788	regulatory region 554788	779 bp proximal
Tssr17240	transcription start site region 17240	1918 bp downstream
Tssr23449	transcription start site region 23449	180 bp upstream
Tssr23450	transcription start site region 23450	144 bp upstream
Tssr23451	transcription start site region 23451	93 bp downstream
Tssr23452	transcription start site region 23452	150 bp downstream
Tssr23453	transcription start site region 23453	175 bp downstream