rs27194874 SNP Detail

Summary

• ID
  rs27194874
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:31954928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCACATTA CCAACAGTCT
  CTCTGAAGTC CTTCAGTGGA CAGTTTAGGG GTAGTGTGTG CGCTGTGGCC TGTTGCTGCT
  TCCAGTATCC GGACCTCAAC CAGCTGGGAG CCAGTGTTTG TGGAGGACCC AGAGGACATG
  GAGGATGGCC AGGGGACACA AAGCCACAAA AAGCACTCCA GCTTCTAGAA GTGTCTGCAA
  R
  CCCAAGAGCT GAACAGCCCC TGGACACCCC CGCACCCCCA GCGAGTCTCC ACCAAGCCGT
  GGCTGTGCTT CCTTTGTGGC CTCATGGCTG ATCCTACAGT GAGTTTCTGG CTCTTCTGGG
  ATCGACTAGG GCAGAGGCTC GGCGGCGGAG GGACAGCTGT CACAGCAGCA GGCAAGCAGA
  GAGCCTCTGT GCACCTGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37400702	NES08754144	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27194874					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400702	NES08754144	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31954928 () rs orientation: forward

Symbol	Name	Function Class
Fam78a	family with sequence similarity 78, member A	within coordinates
Gm16534	predicted gene 16534	5 bp upstream
Rr367161	regulatory region 367161	1573 bp downstream
Rr367162	regulatory region 367162	52 bp upstream
Rr554785	regulatory region 554785	763 bp distal
Rr554786	regulatory region 554786	319 bp distal
Rr554787	regulatory region 554787	within coordinates
Rr554788	regulatory region 554788	1126 bp proximal
Tssr17240	transcription start site region 17240	1571 bp downstream
Tssr23448	transcription start site region 23448	1657 bp upstream
Tssr23449	transcription start site region 23449	148 bp downstream
Tssr23450	transcription start site region 23450	173 bp downstream
Tssr23451	transcription start site region 23451	440 bp downstream
Tssr23452	transcription start site region 23452	497 bp downstream
Tssr23453	transcription start site region 23453	522 bp downstream