rs27194876 SNP Detail

Summary

• ID
  rs27194876
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:31954372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTGTGGA GACAGTTGTC
  ACAGTAAATT CAAGGCCAGT CTGTGAGCCA TACCGAGTCC CAGGCCAATC TGGGGTACAG
  TGTGAAACTC CGTCTCAAGG GACAGAAGTT TCCAGTACCA GAAGGGCTGC TGAGCGTGGC
  AATAAGCTTC ATGCCTTGCA GGACAGGCTG AGCGAAGGGG CAATAGAGAA ACTGGCAAAG
  Y
  CACGGGGAAA AGCCCACGGC CTTCTGAAGC TTCTTAGTCT AGTGACCTTC ATCTAGTGAC
  CTTCAACAGG CCTCAGGTCA CTTCCCAGGG CCAGTTTCTT CCTCTGAGAA GGTGGGGGTG
  GGGAGGCAGG AAAGACCCTG GGACCATGTA CAGCTGTGGG ATGGGGAACT TTCCTATAGC
  TGCTTGCATA ATACTTCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37400704	NES08754173	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27194876					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400704	NES08754173	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31954372 () rs orientation: forward

Symbol	Name	Function Class
Fam78a	family with sequence similarity 78, member A	within coordinates
Gm16534	predicted gene 16534	within coordinates
Rr367160	regulatory region 367160	1851 bp downstream
Rr367161	regulatory region 367161	1017 bp downstream
Rr367162	regulatory region 367162	608 bp upstream
Rr554785	regulatory region 554785	207 bp distal
Rr554786	regulatory region 554786	within coordinates
Rr554787	regulatory region 554787	407 bp proximal
Rr554788	regulatory region 554788	1682 bp proximal
Tssr17240	transcription start site region 17240	1015 bp downstream
Tssr23448	transcription start site region 23448	1101 bp upstream
Tssr23449	transcription start site region 23449	704 bp downstream
Tssr23450	transcription start site region 23450	729 bp downstream
Tssr23451	transcription start site region 23451	996 bp downstream
Tssr23452	transcription start site region 23452	1053 bp downstream
Tssr23453	transcription start site region 23453	1078 bp downstream