rs27194877 SNP Detail

Summary

• ID
  rs27194877
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:31954150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCCAGAG AGCCACCCTT
  CACCAATCTG GTCTAAAATG TCACCTGATA AAATACCAAC CAAAGCCAGG TCCAGGGTGA
  AGATAATCCT GTCTCTGCAT TCCCAGCCGT CATGTCTAGA GGAGTGGAAA AGGCTGAGCC
  CAGACAGCAG CAAATGGACT GGCTTTTGGC AGGATTCAGA GTGATCAGAA ATTTCTCTGG
  W
  CACAGCGCAG AACATGCCTG CTCCTTGTGG AGACAGTTGT CACAGTAAAT TCAAGGCCAG
  TCTGTGAGCC ATACCGAGTC CCAGGCCAAT CTGGGGTACA GTGTGAAACT CCGTCTCAAG
  GGACAGAAGT TTCCAGTACC AGAAGGGCTG CTGAGCGTGG CAATAAGCTT CATGCCTTGC
  AGGACAGGCT GAGCGAAGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37400705	NES08754191	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27194877					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400705	NES08754191	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31954150 () rs orientation: forward

Symbol	Name	Function Class
Fam78a	family with sequence similarity 78, member A	within coordinates
Gm16534	predicted gene 16534	within coordinates
Rr367160	regulatory region 367160	1629 bp downstream
Rr367161	regulatory region 367161	795 bp downstream
Rr367162	regulatory region 367162	830 bp upstream
Rr554785	regulatory region 554785	within coordinates
Rr554786	regulatory region 554786	16 bp proximal
Rr554787	regulatory region 554787	629 bp proximal
Rr554788	regulatory region 554788	1904 bp proximal
Tssr17240	transcription start site region 17240	793 bp downstream
Tssr23448	transcription start site region 23448	879 bp upstream
Tssr23449	transcription start site region 23449	926 bp downstream
Tssr23450	transcription start site region 23450	951 bp downstream
Tssr23451	transcription start site region 23451	1218 bp downstream
Tssr23452	transcription start site region 23452	1275 bp downstream
Tssr23453	transcription start site region 23453	1300 bp downstream