rs27194878 SNP Detail

Summary

• ID
  rs27194878
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31954143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGCATTCC CAGCCGTCAT GTCTAGAGGA GTGGAAAAGG
  CTGAGCCCAG ACAGCAGCAA ATGGACTGGC TTTTGGCAGG ATTCAGAGTG ATCAGAAATT
  Y
  CTCTGGTCAC AGCGCAGAAC ATGCCTGCTC CTTGTGGAGA CAGTTGTCAC AGTAAATTCA
  AGGCCAGTCT GTGAGCCATA CCGAGTCCCA GGCCAATCTG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37400706	NES08754190	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27194878					SNP	T	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400706	NES08754190	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31954143 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fam78a	family with sequence similarity 78, member A			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Gm16534	predicted gene 16534			within coordinates
Rr367160	regulatory region 367160			1622 bp downstream
Rr367161	regulatory region 367161			788 bp downstream
Rr367162	regulatory region 367162			837 bp upstream
Rr554785	regulatory region 554785			within coordinates
Rr554786	regulatory region 554786			23 bp proximal
Rr554787	regulatory region 554787			636 bp proximal
Rr554788	regulatory region 554788			1911 bp proximal
Tssr17240	transcription start site region 17240			786 bp downstream
Tssr23448	transcription start site region 23448			872 bp upstream
Tssr23449	transcription start site region 23449			933 bp downstream
Tssr23450	transcription start site region 23450			958 bp downstream
Tssr23451	transcription start site region 23451			1225 bp downstream
Tssr23452	transcription start site region 23452			1282 bp downstream
Tssr23453	transcription start site region 23453			1307 bp downstream