rs27194891 SNP Detail

Summary

• ID
  rs27194891
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31945001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACTCAATG TCACAAGATC
  CAGTCCTGTA CATGGGAATG ACAGTCACCA CCACTGAGTT CTAGCTCAAT GCAAGTGCTC
  TCAGGTACTG TCATTGCTCA GGCCCGGCCA CCTGCTGGGC AGCATCCTAC CCCTCACTAC
  TACTCTGGAG GCTGAATTCT AGCCAGAGCT GCTGAGGCTC AGTGCTGAGT TAGTTGGTCT
  S
  CATGGTCCAC ACCCTCCCTG CGGTGCCGGA GACCTGACCC AGAAACTTCT GTGGAGGCTG
  CCGAAATAGC AAAAGCAAGG CAGCAGGGAA GCCCTGAGAC AGGTTCAGCC ACTGTGCACA
  TGTGTGCACA GGGAAAGAGC TCCTGGACTT AATGGGAGTC TGTCTCTGAG AAACCAAACG
  ATGGCCTCTA CCACTGTGAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37400719	NES08754324	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27194891					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400719	NES08754324	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31945001 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fam78a	family with sequence similarity 78, member A			Intron
				Noncoding-Transcript-Variant
Gm16534	predicted gene 16534			within coordinates
Nup214	nucleoporin 214			1797 bp downstream
Rr554781	regulatory region 554781			327 bp proximal
Rr554782	regulatory region 554782			1496 bp proximal