rs27194948 SNP Detail

Summary

• ID
  rs27194948
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31928955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTAAACAG AAAGAGTGCC
  TGGAGCTTGT GCAGCTCTGA GTCAGCATGT GCCCCGAGTG CAGCATCCTC TGAGTGTTTG
  GATGCAATTC AACAGTGCTC ATCATTTCAG CAACGGGGCT AATTTAGGCT GCTCTTGGCA
  GCACTGGGCA AGTCATTGTG AATGAGAAGT GCACAGTGGA GAGAAACGCC TGTAAATCAC
  K
  AGTCATTGCT CATGACGTCA CCTGACACTA GTGAAGACAT CGGAGCTTCT CCCTGTTCTC
  AAACGATTTG TAAATCTGTA ATGCTTGGTT TCCCTGCCCC TGGTATTGAG TCAGACAGTG
  CAGAAAGCAT GGCAGATAAG CATTGCCACC TACTCTAAAT GCAGTAACCA AAGAACCTCA
  GATTTGTAGG GAGCCTTCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37400776	NES08754605	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27194948					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400776	NES08754605	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31928955 () rs orientation: forward

Symbol	Name	Function Class
Nup214	nucleoporin 214	Intron
Rr554776	regulatory region 554776	1198 bp distal
Rr554777	regulatory region 554777	within coordinates