rs27194953 SNP Detail

Summary

• ID
  rs27194953
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31926297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCACATGGC CTATCTGGGT GAGGGGCATT TAATGGGCAG
  GGAGAAGGCC TAAGACTTAA AGGAGAGTAA AATCTTGCCA CTGCTTGTCC TGAGCATCAA
  R
  GACAGAACTT TAAAAAGTAT GTACAAACAT CATTGAGCCG GCTCACCAAA TTTGGAGCCT
  CCCAAGGGGT CTTGTTTAAA CATAGAAGTG CTTGGTTAGA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37400781	NES08754658	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27194953					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400781	NES08754658	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31926297 () rs orientation: forward

Symbol	Name	Function Class
Nup214	nucleoporin 214	Intron
Rr367158	regulatory region 367158	1838 bp downstream
Rr554776	regulatory region 554776	977 bp proximal
Tssr17234	transcription start site region 17234	1866 bp downstream
Tssr17235	transcription start site region 17235	1831 bp downstream