CAGCACTTGA GAGGCAGAGG CAGGATCATC TCAGGTAGTT CAAAGCCAGC CTAATCTACA AATGGAATAC CAGGACAGCC AAGTTACACA GAGAAACCCT ACACAGAAAA CAACAACAAC AACACAAAGA AAAGTGATAA TTCTTTAGCA GTTAGGCCCC AGAAAATAAA ACAAAAAATA ATGGCTTCTT GTTAGACAGG W TTGAACATAA TTGCTGATTC ATTTTTTTTT TCAGTGATAG TTTATTTGAA ACAACTTGTA ATTTGTTAGA AGAAATGTTT CCCTTCTTTT AATGAGTGTT AAATTCTTAC CAAAACAACT ATAAAGACAC AGTAGGCAGA GAAACACAAC TCTGAACACC ACCATCCCAC CCACCACCAC CTGGTCTCCT CCCTGTGCCC W = A/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37400782 | NES08754657 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | T | A |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs27194954 | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | T | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37400782 | NES08754657 | PERLEGEN | MM_PANEL | f | SNP | A/T |
Location: Chr2:31925986 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Nup214 | nucleoporin 214 | Intron | ||||||
Rr367158 | regulatory region 367158 | 1527 bp downstream | ||||||
Rr554776 | regulatory region 554776 | 1288 bp proximal | ||||||
Tssr17234 | transcription start site region 17234 | 1555 bp downstream | ||||||
Tssr17235 | transcription start site region 17235 | 1520 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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