rs27194955 SNP Detail

Summary

• ID
  rs27194955
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31925426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCCCACAT GGCAGGACCT
  GTTTTGTCCT GATTGGCTGT GCCCTGTGGC TGAGTATTGC TCCAGTTCTT TTCCTCAGCA
  AACTCTCTAC TTTGCTGACC ACAGACTACC AATTTCACAG GTTAAAACTA CGCCTGTTTG
  CTTAAGGCCA CAGCAAGTAA TTTAACTCTT AATTACAATG TTTTGTTTTA ATTTAGAGGC
  Y
  CTAGAACTGT CATACTCAGG CAGTCAGACC TCATAGTAGA CGGTGCAGGT GATAAGAGTA
  GAGAGGATCC AGGACTCCCT GTTTAGTTAA TTGGCTCTGT GGATAATTAT TTCTTTTGTA
  GGAAGCAGCC ATGTTGCTAC TTTGAATAGC AATTACACAC ACACAAAATG CACACATTGT
  AGAGTTTTTG AAGAGAAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37400783	NES08754673	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27194955					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400783	NES08754673	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31925426 () rs orientation: forward

Symbol	Name	Function Class
Nup214	nucleoporin 214	Intron
Rr367158	regulatory region 367158	967 bp downstream
Rr554776	regulatory region 554776	1848 bp proximal
Tssr17234	transcription start site region 17234	995 bp downstream
Tssr17235	transcription start site region 17235	960 bp downstream