rs27195061 SNP Detail

Summary

• ID
  rs27195061
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:31879728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCCTGCA AAGGTTATCA
  GATCCTTTGG TTTTGTTTGC AGATTTATTT AAGAGTTAGA GTCAGCTTGG TTTGCAGCCC
  TGGGACTGCA CTTTCTTTAC TTGGCACAGT CATGTATGTT AGTGTCTGCT CTTCTGGGCC
  TCAACAGCTT CTGTTCTCTA GCTTCATTAC TTGTCTCCTG TTCCCTTCTG ACTCATGCTT
  Y
  CCGGTAGGTC AAGACAGAAG GCTAGGCAGA ATGAGTCTTA AGAATCAGGA ATCATTTGTT
  GGATGGAATG GAGCCCAGCC AGGAAAACAA GGAGCAAGAA GGGAGTTACT TGATAGATAT
  AGAAGCTTCT TATGGGGTGT AAGCAGCTGG CCAGTGTGAG GCATGAGGAA GAAAGGACCT
  AAGTTTGCCT TCTGTCTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37400891	NES08755539	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27195061					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400891	NES08755539	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31879728 () rs orientation: forward

Symbol	Name	Function Class
Nup214	nucleoporin 214	within coordinates
Rr64020	regulatory region 64020	1318 bp distal
Rr64021	regulatory region 64021	1263 bp proximal
Tssr17229	transcription start site region 17229	1639 bp upstream