rs27195064 SNP Detail

Summary

• ID
  rs27195064
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:31879623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTGGTAT CTTTTCTTGT
  TACACTTGTC GCATCAACAT AATGCCTTTC TGGCTGTTGT CTCCGTCTTT CTGTTTGCAA
  TTCTCACACT GCCACTGTCT GCGTGCTGGC CTGCAAAGGT TATCAGATCC TTTGGTTTTG
  TTTGCAGATT TATTTAAGAG TTAGAGTCAG CTTGGTTTGC AGCCCTGGGA CTGCACTTTC
  Y
  TTACTTGGCA CAGTCATGTA TGTTAGTGTC TGCTCTTCTG GGCCTCAACA GCTTCTGTTC
  TCTAGCTTCA TTACTTGTCT CCTGTTCCCT TCTGACTCAT GCTTCCCGGT AGGTCAAGAC
  AGAAGGCTAG GCAGAATGAG TCTTAAGAAT CAGGAATCAT TTGTTGGATG GAATGGAGCC
  CAGCCAGGAA AACAAGGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37400894	NES08755536	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27195064					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400894	NES08755536	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31879623 () rs orientation: forward

Symbol	Name	Function Class
Nup214	nucleoporin 214	within coordinates
Rr64020	regulatory region 64020	1213 bp distal
Rr64021	regulatory region 64021	1368 bp proximal
Tssr17229	transcription start site region 17229	1744 bp upstream