rs27195129 SNP Detail

Summary

• ID
  rs27195129
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31854488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTCATAA GACACCAGTG
  ACCTGAGTTC CATCCCCCAA ACTCATGAAA AGGTGGGAGG AGAGAACGGA CGTCGCAAAG
  TAGCCTCCAA ACACATGCAT GCCCAGACAC ATGAATCATA CACATGTAAA CACACACACA
  CACACACACA CACACACACA CACACAGAGT CAATCAAGGG CTGTAGACAG TTTAAGCAGA
  Y
  GTTGTTTTAA CAAGGCTAAG CAAAGCAAAC ATTTCAAAGA GGGATTGGAG TGAGCTTTTG
  CTTTGTTAAA CTAGAAAGAA GTTTTGATGA AGGTGATGCA AATCATAGTA GATCAGATTT
  CCATTTTAGG GTATTTCGTC CCATGATCCT CTAGAAAATC CCACAAGGGA GGCTGGTGTC
  TATACCACGA TACAGCAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37400960	NES08755910	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27195129					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400960	NES08755910	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31854488 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aif1l	allograft inflammatory factor 1-like			Intron
				Noncoding-Transcript-Variant
Gm13442	predicted gene 13442			within coordinates
Rr554763	regulatory region 554763			1940 bp distal
Rr554764	regulatory region 554764			1439 bp distal
Rr554765	regulatory region 554765			549 bp distal
Rr554766	regulatory region 554766			693 bp proximal
Rr554767	regulatory region 554767			813 bp proximal
Tssr459	transcription start site region 459			1206 bp upstream