rs27195135 SNP Detail

Summary

• ID
  rs27195135
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31851577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGTGGGA ATAGCTTTTT
  AAGAGGAGAG ACCAGGAGTG AAGGGCTCCT GCACTCTGCA TCTCTCAGGG CTGTGGTTTA
  AGGTGGCTTA AGTATGGAGG AGCTCAGCAG GGTTTCTGAC TGTACGAGCA TCAGTTTCCT
  CAGGCGGGAG GCAGGCACAG AAATGGCGGC TACCTCCTAA GGCTCTTGGG AGATGTGAAA
  M
  GAGAGTCAGT GTGCCTGCGA TCCAGCTGCT GTTGTTTGGA TCCTACCTGT AGCTGCCCGA
  AGGACCCATC TGGTTCTGGG AGGACTCAAA TATGTGTCTT CTGTGGCTTG TGAAGGAAAT
  CGCACTAGGG ATTAACCCTC ATCTGACAGG TGAGGGCGGA GGCTGAAGAT GGCTGATTCA
  TTCAGTCAGT TTCTGGTCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37400966	NES08755928	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27195135					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400966	NES08755928	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31851577 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aif1l	allograft inflammatory factor 1-like			Intron
				Noncoding-Transcript-Variant
Gm13442	predicted gene 13442			within coordinates
Rr554762	regulatory region 554762			1275 bp distal
Rr554763	regulatory region 554763			234 bp proximal
Rr554764	regulatory region 554764			972 bp proximal
Rr554765	regulatory region 554765			1947 bp proximal
Tssr17223	transcription start site region 17223			449 bp upstream
Tssr17224	transcription start site region 17224			497 bp upstream
Tssr17225	transcription start site region 17225			615 bp upstream
Tssr17226	transcription start site region 17226			636 bp upstream