rs27195769 SNP Detail

Summary

• ID
  rs27195769
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:28752745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGCACTT ACATTAAGAC
  TTGAAAAGCC CCTGGTGAAG GTTGGCTGCT GCTGTGTCCC TTGATGCCCT GAGTGAGGTG
  TGCTTGCAGG ACAAAGTACA CACCCACAAA TGACTAGAGC TGTTCACCAT AGTACTTGGG
  ACCGTGCCAG TGCCTATAGG GAGACATCCT TTCCGCATTT TATTTATCTG TTGACAGCAG
  R
  TAGATAAAGC CAGATCTCAG GTATATGCTT CACCGTGATC TAGGCCGATC GGTACGCACT
  CCCCTTCACC ACCACAGAGC TCTTGTTAAA ATCCAACTAA AGGAGCCGTT GGTTAGTACA
  GAGCTCACCT AGTGACAAAA CACTGGTCAT GCAGTAATGT TACAGCTGAT TGGCTAAGCC
  TTATTGAGCT CCATGAGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37409690	NES08764344	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27195769					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37409690	NES08764344	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28752745 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ddx31	DEAD/H box helicase 31			Intron
				Noncoding-Transcript-Variant
Rr553919	regulatory region 553919			1317 bp distal
Rr553920	regulatory region 553920			1319 bp proximal