rs27195774 SNP Detail

Summary

• ID
  rs27195774
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:28750613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATAATGGC TTTAGGAGTC
  ACTGCACACT GGGCTGTGGC CAGGGTCACT AATGGTGAAA GGCCAACGTG CATGGACTAG
  CTCACCCTAA AGGACATTTG TTTCTTTTTG AGCTTGGAGC TCTGGTCATT TTCCTTTCTG
  TCATCTTTGT AGGGTAGAAT ATCAATGTTG GTATTTTTTA ATAATTAAAA GCTGTGTCTC
  Y
  GTATTTCCAC ATCAGGGCCA GCATGTACCT GTACCTTAGA GGCAGATATG CTGCTCGTTT
  TGAGGACATC TATGCTTACG GCCATGTGCC TGCTTTCCCC TTGTGTCTGT GTAGTTTGAG
  AAGAACCAGA AGATGATTGT CTTTTTCTCA AGTTGTGAAT TGGTGGAGTT CCACTACAGC
  CTCTTCCTTC ACACCCTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37409695	NES08764413	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C		C	C	T	C
ss146394986	ENSMUSSNP3196383	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27195774					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37409695	NES08764413	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28750613 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ddx31	DEAD/H box helicase 31			Intron
				Noncoding-Transcript-Variant
Rr553919	regulatory region 553919			223 bp proximal