rs27195778 SNP Detail

Summary

• ID
  rs27195778
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:28749938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGATGAGAA CATAGAAAAT
  GCTAGAAATT GTGGGCATTG GGCTGTGGCA AGAGACAGAT CAATGTTGGA CTTTCCCTAA
  AAAGCATGTG TTCTGGAGGT GTATATGTGA CCACCCTTTT TTGTACTTCT CATTGTATCT
  AAGGTGTAAC ACGGCTAGTT GATATCAGTT TGCACAATCC AGTCAGTATC TCTGTCCTGG
  R
  CAAAAACTGC AACCAGCCCA ATCCTAAGGA AGTTGCTAGT ATCCAGCTCA ACAGCTTTGC
  CATACCAGAG AGTCTCGACC AGCATGTGGT GTTGGTTCCC AGCAAGCTAC GTCTTGTCTG
  CCTTGCAGCC TTCATCCTGC AAAAGTGCAA GGTAGGAGCG TGGCTTAGAT CTGGACCCAT
  CTAAGGAAGT AGATTTTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37409699	NES08764405	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27195778					SNP	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37409699	NES08764405	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28749938 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ddx31	DEAD/H box helicase 31			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Rr553919	regulatory region 553919			898 bp proximal