rs27195972 SNP Detail

Summary

• ID
  rs27195972
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:28683364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGCCTCC TTTATTGACA
  CAATCAAGAG CCAATCAGGG AACCTCCCTC TACATTCTAC ATCCTCCTCC TCTCCTTCCT
  CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCACGCA CACACACACA
  CACACACACA CACACACACA CACACACACA CACACACGCA GGCACACACA GAGCAATCAC
  Y
  TTCCCTCTCC AGCTCTCAAA ACGTCTTGCT TCATGGGAAA ACCTTGTTTG TTGTTCCCAC
  CACTGATTCT GACCACATAA CCCCTCCACT CCTCCCCCAG AGCATCAGCT ACTTCTGTGG
  CCATGCATTG CTCACAGAAA GTACAAAGCT TGTGTTCATC ATCCACTTCA AGGAATTTCT
  GATAGCTGCT GGCCAGGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37409897	NES08766628	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27195972					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37409897	NES08766628	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28683364 () rs orientation: forward

Symbol	Name	Function Class
Ak8	adenylate kinase 8	Intron
Gm13385	predicted gene 13385	within coordinates
Rr553908	regulatory region 553908	within coordinates
Rr553909	regulatory region 553909	1465 bp proximal