rs27196581 SNP Detail

Summary

• ID
  rs27196581
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29782090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCAGCTTT TTTTTGGGTC
  ACCTGATTGG AGATGACAGG TAGGCTTTCA GCACAAGGTC ACAATACATG TGATGCGATG
  GCAGGTTTAA AAGGCCAGCC ATGCAGACAG CCTACACCTG GTATCACCCT CCTGCTGAGC
  ACACCATGCG CGCCTTGTGC TCATCTACAG AGAGCCAGGG GACTCAAGAC TGCTGCTCCA
  R
  GCTGCCGACG CAATAGCCAC CACATGCAGT GTGCCATTTC CCAAGAGCTG AGAAACAGGA
  GAACCTTGGC TTTCTGCTCA TAATCTGGTT CTTGTGCCCG GGTGCAGGTT TCCATCGTGT
  GGGAAGAACG GAGTAACGAG TCTCACACAG AAAAAAGTCT TGAGAACACC TTGTGGCGCA
  CCCAGTGTAA CTGTTACGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37405918	NES08754882	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27196581					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37405918	NES08754882	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29782090 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11418	CpG island 11418	1146 bp distal
Gm75149	predicted gene, 75149	1264 bp upstream
Odf2	outer dense fiber of sperm tails 2	within coordinates
Rr554173	regulatory region 554173	1528 bp distal
Rr554174	regulatory region 554174	784 bp distal
Rr554175	regulatory region 554175	1368 bp distal
Tssr456	transcription start site region 456	1964 bp downstream
Tssr17038	transcription start site region 17038	1997 bp downstream
Tssr17039	transcription start site region 17039	1971 bp downstream
Tssr17040	transcription start site region 17040	1567 bp downstream
Tssr17041	transcription start site region 17041	1547 bp downstream
Tssr17042	transcription start site region 17042	1533 bp downstream
Tssr17043	transcription start site region 17043	1522 bp downstream
Tssr17044	transcription start site region 17044	1368 bp downstream
Tssr17045	transcription start site region 17045	1210 bp downstream
Tssr17046	transcription start site region 17046	71 bp downstream
Tssr17047	transcription start site region 17047	976 bp upstream
Tssr23341	transcription start site region 23341	1708 bp upstream