rs27196582 SNP Detail

Summary

• ID
  rs27196582
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:29781941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGTATGCTT CAGCAAGGGT
  GTGAGCCTTC CTTTTACAAG CTGGTGTCCC AGTGACTTTG CTCCTGAGCT GCATGTTTTA
  GGTTAACCTG TCACTGAACG CTTCCCCAGA GGAGCTTGGG GACTGTAACC CTTGTTGAGA
  CTGGTGCCTT GGCAGCTTTT TTTTGGGTCA CCTGATTGGA GATGACAGGT AGGCTTTCAG
  Y
  ACAAGGTCAC AATACATGTG ATGCGATGGC AGGTTTAAAA GGCCAGCCAT GCAGACAGCC
  TACACCTGGT ATCACCCTCC TGCTGAGCAC ACCATGCGCG CCTTGTGCTC ATCTACAGAG
  AGCCAGGGGA CTCAAGACTG CTGCTCCAAG CTGCCGACGC AATAGCCACC ACATGCAGTG
  TGCCATTTCC CAAGAGCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37405919	NES08754881	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27196582					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37405919	NES08754881	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29781941 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11418	CpG island 11418			997 bp distal
Gm75149	predicted gene, 75149			1115 bp upstream
Odf2	outer dense fiber of sperm tails 2			Intron
				Noncoding-Transcript-Variant
Rr554173	regulatory region 554173			1379 bp distal
Rr554174	regulatory region 554174			635 bp distal
Rr554175	regulatory region 554175			1219 bp distal
Tssr453	transcription start site region 453			1936 bp downstream
Tssr454	transcription start site region 454			1913 bp downstream
Tssr455	transcription start site region 455			1884 bp downstream
Tssr456	transcription start site region 456			1815 bp downstream
Tssr17038	transcription start site region 17038			1848 bp downstream
Tssr17039	transcription start site region 17039			1822 bp downstream
Tssr17040	transcription start site region 17040			1418 bp downstream
Tssr17041	transcription start site region 17041			1398 bp downstream
Tssr17042	transcription start site region 17042			1384 bp downstream
Tssr17043	transcription start site region 17043			1373 bp downstream
Tssr17044	transcription start site region 17044			1219 bp downstream
Tssr17045	transcription start site region 17045			1061 bp downstream
Tssr17046	transcription start site region 17046			56 bp upstream
Tssr17047	transcription start site region 17047			1125 bp upstream
Tssr23341	transcription start site region 23341			1559 bp upstream