rs27196583 SNP Detail

Summary

• ID
  rs27196583
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29781912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTGGACC ACGTTGGGAA
  GTGGGGTCTT CGTATGCTTC AGCAAGGGTG TGAGCCTTCC TTTTACAAGC TGGTGTCCCA
  GTGACTTTGC TCCTGAGCTG CATGTTTTAG GTTAACCTGT CACTGAACGC TTCCCCAGAG
  GAGCTTGGGG ACTGTAACCC TTGTTGAGAC TGGTGCCTTG GCAGCTTTTT TTTGGGTCAC
  Y
  TGATTGGAGA TGACAGGTAG GCTTTCAGCA CAAGGTCACA ATACATGTGA TGCGATGGCA
  GGTTTAAAAG GCCAGCCATG CAGACAGCCT ACACCTGGTA TCACCCTCCT GCTGAGCACA
  CCATGCGCGC CTTGTGCTCA TCTACAGAGA GCCAGGGGAC TCAAGACTGC TGCTCCAAGC
  TGCCGACGCA ATAGCCACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37405920	NES08754880	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	C	C	C	C	C	C	T
ss146397888	ENSMUSSNP7197833	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27196583					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37405920	NES08754880	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29781912 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11418	CpG island 11418	968 bp distal
Gm75149	predicted gene, 75149	1086 bp upstream
Odf2	outer dense fiber of sperm tails 2	within coordinates
Rr554173	regulatory region 554173	1350 bp distal
Rr554174	regulatory region 554174	606 bp distal
Rr554175	regulatory region 554175	1190 bp distal
Tssr453	transcription start site region 453	1907 bp downstream
Tssr454	transcription start site region 454	1884 bp downstream
Tssr455	transcription start site region 455	1855 bp downstream
Tssr456	transcription start site region 456	1786 bp downstream
Tssr17038	transcription start site region 17038	1819 bp downstream
Tssr17039	transcription start site region 17039	1793 bp downstream
Tssr17040	transcription start site region 17040	1389 bp downstream
Tssr17041	transcription start site region 17041	1369 bp downstream
Tssr17042	transcription start site region 17042	1355 bp downstream
Tssr17043	transcription start site region 17043	1344 bp downstream
Tssr17044	transcription start site region 17044	1190 bp downstream
Tssr17045	transcription start site region 17045	1032 bp downstream
Tssr17046	transcription start site region 17046	85 bp upstream
Tssr17047	transcription start site region 17047	1154 bp upstream
Tssr23341	transcription start site region 23341	1530 bp upstream